Was this the only hardware or software change made?
What prompted the tube change?
I suspect the symptoms are caused by a bad LPS. If you have a voltmeter probe the PWM signal from the controller to confirm you are getting 0V at 0% power.
No, on top of that, I have run the PWM signal from the MG3 to the “positive” side of the potentiometer to have manual control over laser power during jobs.
Whats LPS?
Edit:
You were right, after reverting PWM signal from the MG3 directly to the power controll on PSU it solved the issue.
In that case, is there a way for me to wire it so I still have manual control (through pot)?