My cuts aren't square

I have done the calibration of the x and y axis and now all my sides are measuring true to the size requested in light burn but my cuts are still skewed by a 16th of an inch per inch.

It sounds like your frame isn’t square. Create a square/rectangle the dimensions of your work area and run it in line mode. Measure the diagonals of the burn to check for square. If the diagonals measure the same, your frame is square, if they are different, your frame is not square. If running the perimeter of your machine isn’t square, your frame isn’t square and none of your cuts will be square.