What did you set Min Power to? If it’s zero, that’s why - CO2 tubes don’t fire at zero percent, but about 10% of the rated wattage of the tube (ballpark), so a 40w tube will fire at roughly 4% power. The gaps will be the start / end points of the cut where the power is ramped down, and when it falls below the firing threshold, the tube stops firing.
Exactly right. 0% power scale == Min Power, 100% power scale == Max Power, though there’s a caveat - if you are going at or below the ‘Start Speed’ setting in the controller, it only uses Min Power. The ramping to Max Power starts when the controller passes the ‘Start Speed’.