Y axis moving with Rotary enabled on Z axis

I have a DIY setup that works great. I’m using the einsy rambo to run the system and Marlin as firmware. I set the software to use the Z axis for the rotary but even with it enabled the Y still moves. Do I have to still disconnect the Y to use the rotary? Am I missing something in the software? Do I have to change all of the Y moves in the gcode to Z moves manually?

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