They only asked me to swap them at the drivers, so I assumed the drivers were the bits I rectangle out in my picture above which is the only leads I swapped around the X-axis and Y-axis ones in the drivers.
Then they asked me to start it up and try the directional buttons on the control panel.
Which I did and I still only had motion on the X-axis to move left and right and the Y-axis was still grinding and would not move up and down.
So I assumed that cancelled out that the drivers were working and ok 
With the leads swapped around everything was still the same.